Sequence Similarity Clusters for the Entities in PDB 1DIO

Entity #1 | Chains: A,L
PROTEIN (DIOL DEHYDRATASE) protein, length: 554 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 3262
95 % 7 8 4022 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 7 8 4067
70 % 8 10 3140
50 % 8 10 3085
40 % 8 10 3031
30 % 8 10 2843
Entity #2 | Chains: B,E
PROTEIN (DIOL DEHYDRATASE) protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 3504
95 % 7 8 4296 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 7 8 4334
70 % 7 8 4254
50 % 7 8 4091
40 % 7 8 3901
30 % 7 8 3631
Entity #3 | Chains: G,M
PROTEIN (DIOL DEHYDRATASE) protein, length: 173 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 3545
95 % 7 8 4334 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 7 8 4372
70 % 7 8 4292
50 % 7 8 4124
40 % 7 8 3936
30 % 7 8 3667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures