Sequence Similarity Clusters for the Entities in PDB 1DI2

Entity #1 | Chains: C,D,E,G
RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
DOUBLE STRANDED RNA BINDING PROTEIN A protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31685
95 % 1 1 27450 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 26420
70 % 1 1 23880
50 % 1 1 20481
40 % 1 1 18086
30 % 1 2 13439

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures