Sequence Similarity Clusters for the Entities in PDB 1DI2

Entity #1 | Chains: C,D,E,G
RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3') rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
DOUBLE STRANDED RNA BINDING PROTEIN A protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48626
95 % 1 1 36332 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 34691
70 % 1 1 30840
50 % 1 1 26375
40 % 1 1 23266
30 % 1 2 14478

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures