Sequence Similarity Clusters for the Entities in PDB 1DHK

Entity #1 | Chains: A
PORCINE PANCREATIC ALPHA-AMYLASE protein, length: 496 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 17 2498
95 % 5 17 2784 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.5
PDBFlex
90 % 5 17 2846
70 % 23 79 589
50 % 24 83 604
40 % 27 92 590
30 % 27 92 587
Entity #2 | Chains: B
BEAN LECTIN-LIKE INHIBITOR protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 33374
95 % 1 2 28734 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 27602
70 % 1 2 24879
50 % 22 123 141
40 % 29 161 106
30 % 29 161 120

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures