Sequence Similarity Clusters for the Entities in PDB 1DGW

Entity #1 | Chains: A
CANAVALIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7361
95 % 1 6 7440 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 1 6 7401
70 % 1 6 7199
50 % 1 6 6641
40 % 1 6 6153
30 % 1 6 5386
Entity #2 | Chains: X
CANAVALIN protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20457
95 % 1 2 18510 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 2 17491
70 % 1 2 16649
50 % 1 2 14536
40 % 1 2 12643
30 % 1 2 10647
Entity #3 | Chains: Y
CANAVALIN protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19733
95 % 1 2 17939 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 2 17490
70 % 1 2 16185
50 % 1 2 14166
40 % 1 2 12642
30 % 1 2 10646

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures