Sequence Similarity Clusters for the Entities in PDB 1DGW

Entity #1 | Chains: A
CANAVALIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 6579
95 % 1 6 7176 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 1 6 7142
70 % 1 6 6954
50 % 1 6 6427
40 % 1 6 5994
30 % 1 6 5358
Entity #2 | Chains: X
CANAVALIN protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24392
95 % 1 2 20813 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 20236
70 % 1 2 18593
50 % 1 2 16133
40 % 1 2 14390
30 % 1 2 12311
Entity #3 | Chains: Y
CANAVALIN protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24206
95 % 1 2 20655 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 2 20077
70 % 1 2 18444
50 % 1 2 16006
40 % 1 2 14268
30 % 1 2 12212

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures