Sequence Similarity Clusters for the Entities in PDB 1DGW

Entity #1 | Chains: A
CANAVALIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 6475
95 % 1 6 7071
90 % 1 6 7041
70 % 1 6 6863
50 % 1 6 6341
40 % 1 6 5911
30 % 1 6 5287
Entity #2 | Chains: X
CANAVALIN protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24062
95 % 1 2 20548 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 2 19980
70 % 1 2 18353
50 % 1 2 15941
40 % 1 2 14225
30 % 1 2 12166
Entity #3 | Chains: Y
CANAVALIN protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23876
95 % 1 2 20390 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 19819
70 % 1 2 18203
50 % 1 2 15814
40 % 1 2 14102
30 % 1 2 12066

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.