Sequence Similarity Clusters for the Entities in PDB 1DGW

Entity #1 | Chains: A
CANAVALIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 6787
95 % 1 6 7399 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 1 6 7369
70 % 1 6 7159
50 % 1 6 6616
40 % 1 6 6165
30 % 1 6 5520
Entity #2 | Chains: X
CANAVALIN protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25191
95 % 1 2 21435 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 20816
70 % 1 2 19106
50 % 1 2 16560
40 % 1 2 14755
30 % 1 2 12619
Entity #3 | Chains: Y
CANAVALIN protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25002
95 % 1 2 21271 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 2 20651
70 % 1 2 18952
50 % 1 2 16428
40 % 1 2 14629
30 % 1 2 12515

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures