Sequence Similarity Clusters for the Entities in PDB 1DGR

Entity #1 | Chains: A,B,C
CANAVALIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 6388
95 % 4 6 6966 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 4 6 6940
70 % 4 6 6731
50 % 4 6 6232
40 % 4 6 5810
30 % 4 6 5204
Entity #2 | Chains: N,V,X
CANAVALIN protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23681
95 % 2 2 20186 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 19630
70 % 2 2 18084
50 % 2 2 15719
40 % 2 2 14031
30 % 2 2 12001
Entity #3 | Chains: M,W,Y
CANAVALIN protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23499
95 % 2 2 20031 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 2 19472
70 % 2 2 17938
50 % 2 2 15596
40 % 2 2 13911
30 % 2 2 11904

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.