Sequence Similarity Clusters for the Entities in PDB 1DGR

Entity #1 | Chains: A,B,C
CANAVALIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 6483
95 % 4 6 7079 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 4 6 7049
70 % 4 6 6872
50 % 4 6 6348
40 % 4 6 5918
30 % 4 6 5292
Entity #2 | Chains: N,V,X
CANAVALIN protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24102
95 % 2 2 20580 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20011
70 % 2 2 18384
50 % 2 2 15964
40 % 2 2 14247
30 % 2 2 12186
Entity #3 | Chains: M,W,Y
CANAVALIN protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23916
95 % 2 2 20422 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 2 19850
70 % 2 2 18234
50 % 2 2 15837
40 % 2 2 14124
30 % 2 2 12086

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.