Sequence Similarity Clusters for the Entities in PDB 1DGR

Entity #1 | Chains: A,B,C
CANAVALIN protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 6573
95 % 4 6 7170 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 4 6 7137
70 % 4 6 6948
50 % 4 6 6420
40 % 4 6 5988
30 % 4 6 5353
Entity #2 | Chains: N,V,X
CANAVALIN protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24355
95 % 2 2 20779 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 20208
70 % 2 2 18567
50 % 2 2 16110
40 % 2 2 14373
30 % 2 2 12295
Entity #3 | Chains: M,W,Y
CANAVALIN protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24169
95 % 2 2 20621 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 2 20049
70 % 2 2 18418
50 % 2 2 15983
40 % 2 2 14251
30 % 2 2 12196

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.