Sequence Similarity Clusters for the Entities in PDB 1DGI

Entity #1 | Chains: R
POLIOVIRUS RECEPTOR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 17007
95 % 3 3 15776
90 % 3 3 15442
70 % 3 3 14445
50 % 3 3 12749
40 % 3 3 11427
30 % 10 10 3051
Entity #2 | Chains: 1
VP1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 25 2198
95 % 25 25 2498
90 % 25 25 2573
70 % 36 36 1600
50 % 57 57 1061
40 % 130 160 299
30 % 130 160 313
Entity #3 | Chains: 2
VP2 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 31 1635
95 % 31 31 1934
90 % 31 31 1975
70 % 49 49 1175
50 % 130 160 350
40 % 130 160 375
30 % 164 197 181
Entity #4 | Chains: 3
VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 33 1510
95 % 33 33 1777
90 % 33 33 1821
70 % 49 49 1186
50 % 139 169 258
40 % 141 171 281
30 % 177 210 162
Entity #5 | Chains: 4
VP4 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53305
95 % 1 1 43899
90 % 33 33 1806
70 % 61 87 595
50 % 95 122 458
40 % 96 123 489
30 % 96 123 489

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures