Sequence Similarity Clusters for the Entities in PDB 1DGI

Entity #1 | Chains: R
POLIOVIRUS RECEPTOR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14671
95 % 3 3 13864
90 % 3 3 13647
70 % 3 3 12867
50 % 3 3 11449
40 % 3 3 10386
30 % 10 10 2888
Entity #2 | Chains: 1
VP1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2227
95 % 25 25 2283
90 % 25 25 2347
70 % 36 36 1507
50 % 42 42 1328
40 % 125 155 276
30 % 125 155 284
Entity #3 | Chains: 2
VP2 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 1434
95 % 31 31 1764
90 % 31 31 1798
70 % 48 48 1117
50 % 127 157 298
40 % 127 157 313
30 % 159 192 165
Entity #4 | Chains: 3
VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 31 1305
95 % 31 31 1768
90 % 31 31 1801
70 % 48 48 1120
50 % 134 164 242
40 % 136 166 260
30 % 172 205 146
Entity #5 | Chains: 4
VP4 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71623
95 % 1 1 49733
90 % 33 33 1686
70 % 61 87 554
50 % 95 122 427
40 % 96 123 454
30 % 96 123 453

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.