Sequence Similarity Clusters for the Entities in PDB 1DGI

Entity #1 | Chains: R
POLIOVIRUS RECEPTOR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14429
95 % 3 3 13628
90 % 3 3 13406
70 % 3 3 12606
50 % 3 3 11230
40 % 3 3 10186
30 % 10 10 2839
Entity #2 | Chains: 1
VP1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2190
95 % 25 25 2239
90 % 25 25 2305
70 % 36 36 1485
50 % 42 42 1307
40 % 125 155 275
30 % 125 155 282
Entity #3 | Chains: 2
VP2 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 1411
95 % 31 31 1736
90 % 31 31 1768
70 % 48 48 1101
50 % 127 157 293
40 % 127 157 307
30 % 159 192 163
Entity #4 | Chains: 3
VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 31 1289
95 % 31 31 1740
90 % 31 31 1772
70 % 48 48 1104
50 % 134 164 240
40 % 136 166 256
30 % 170 203 147
Entity #5 | Chains: 4
VP4 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70527
95 % 1 1 48927
90 % 33 33 1656
70 % 61 87 539
50 % 95 122 418
40 % 96 123 445
30 % 96 123 443

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.