Sequence Similarity Clusters for the Entities in PDB 1DGI

Entity #1 | Chains: R
POLIOVIRUS RECEPTOR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14900
95 % 3 3 14067
90 % 3 3 13841
70 % 3 3 13024
50 % 3 3 11581
40 % 3 3 10500
30 % 10 10 2928
Entity #2 | Chains: 1
VP1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2279
95 % 25 25 2314
90 % 25 25 2377
70 % 36 36 1531
50 % 42 42 1344
40 % 129 159 276
30 % 129 159 285
Entity #3 | Chains: 2
VP2 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 1466
95 % 31 31 1787
90 % 31 31 1823
70 % 48 48 1136
50 % 129 159 303
40 % 129 159 315
30 % 161 194 165
Entity #4 | Chains: 3
VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 31 1336
95 % 31 31 1791
90 % 31 31 1826
70 % 48 48 1139
50 % 138 168 240
40 % 140 170 258
30 % 176 209 148
Entity #5 | Chains: 4
VP4 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72568
95 % 1 1 50395
90 % 33 33 1712
70 % 61 87 565
50 % 95 122 435
40 % 96 123 463
30 % 96 123 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.