Sequence Similarity Clusters for the Entities in PDB 1DGI

Entity #1 | Chains: R
POLIOVIRUS RECEPTOR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14094
95 % 3 3 13320
90 % 3 3 13107
70 % 3 3 12332
50 % 3 3 11013
40 % 3 3 9983
30 % 10 10 2789
Entity #2 | Chains: 1
VP1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2138
95 % 25 25 2185
90 % 25 25 2253
70 % 34 34 1563
50 % 40 40 1362
40 % 118 148 281
30 % 118 148 285
Entity #3 | Chains: 2
VP2 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 1367
95 % 31 31 1690
90 % 31 31 1718
70 % 46 46 1128
50 % 120 150 299
40 % 120 150 316
30 % 145 178 170
Entity #4 | Chains: 3
VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 31 1245
95 % 31 31 1695
90 % 31 31 1723
70 % 46 46 1130
50 % 84 114 432
40 % 129 159 262
30 % 156 189 152
Entity #5 | Chains: 4
VP4 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69250
95 % 1 1 48019
90 % 31 31 1759
70 % 56 82 571
50 % 89 116 429
40 % 89 116 467
30 % 89 116 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.