Sequence Similarity Clusters for the Entities in PDB 1DGI

Entity #1 | Chains: R
POLIOVIRUS RECEPTOR protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 15514
95 % 3 3 14575
90 % 3 3 14343
70 % 3 3 13480
50 % 3 3 11979
40 % 3 3 10848
30 % 10 10 3036
Entity #2 | Chains: 1
VP1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 21 2379
95 % 25 25 2425
90 % 25 25 2489
70 % 36 36 1591
50 % 43 43 1364
40 % 130 160 279
30 % 130 160 293
Entity #3 | Chains: 2
VP2 protein, length: 268 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 29 1529
95 % 31 31 1882
90 % 31 31 1925
70 % 49 49 1152
50 % 130 160 338
40 % 130 160 353
30 % 162 195 169
Entity #4 | Chains: 3
VP3 protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 31 1402
95 % 31 31 1886
90 % 31 31 1929
70 % 49 49 1154
50 % 139 169 247
40 % 141 171 262
30 % 177 210 153
Entity #5 | Chains: 4
VP4 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74816
95 % 1 1 51850
90 % 33 33 1811
70 % 61 87 591
50 % 95 122 452
40 % 96 123 477
30 % 96 123 470

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures