Sequence Similarity Clusters for the Entities in PDB 1DFN

Entity #1 | Chains: A,B
DEFENSIN HNP-3 protein, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 2664
95 % 8 11 2993 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 8 11 3047
70 % 20 25 918
50 % 20 25 963
40 % 26 38 565
30 % 26 38 567

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures