Sequence Similarity Clusters for the Entities in PDB 1DFM

Entity #1 | Chains: C,D
DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
ENDONUCLEASE BGLII protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15279
95 % 1 3 14353 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 2.1
PDBFlex
90 % 1 3 14107
70 % 1 3 13241
50 % 1 3 11776
40 % 1 3 10668
30 % 1 3 9274

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.