Sequence Similarity Clusters for the Entities in PDB 1DFB

Entity #1 | Chains: L
IGG1-KAPPA 3D6 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61271
95 % 6 13 3328 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.5
PDBFlex
90 % 365 729 3
70 % 1192 2362 1
50 % 2437 4781 1
40 % 2437 4781 1
30 % 2776 5635 1
Entity #2 | Chains: H
IGG1-KAPPA 3D6 FAB (HEAVY CHAIN) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59727
95 % 1 1 42063
90 % 114 229 38
70 % 1181 2311 2
50 % 2438 4781 1
40 % 2438 4781 1
30 % 2777 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures