Sequence Similarity Clusters for the Entities in PDB 1DFB

Entity #1 | Chains: L
IGG1-KAPPA 3D6 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59631
95 % 6 13 3223 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.5
PDBFlex
90 % 346 693 3
70 % 1134 2264 1
50 % 2321 4587 1
40 % 2321 4587 1
30 % 2645 5392 1
Entity #2 | Chains: H
IGG1-KAPPA 3D6 FAB (HEAVY CHAIN) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58136
95 % 1 1 40914
90 % 105 212 40
70 % 1128 2222 2
50 % 2322 4587 1
40 % 2322 4587 1
30 % 2646 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.