Sequence Similarity Clusters for the Entities in PDB 1DFB

Entity #1 | Chains: L
IGG1-KAPPA 3D6 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51523
95 % 8 15 2829 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.5
PDBFlex
90 % 389 762 2
70 % 1274 2519 1
50 % 2607 5107 1
40 % 2986 5756 1
30 % 3659 7175 1
Entity #2 | Chains: H
IGG1-KAPPA 3D6 FAB (HEAVY CHAIN) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46499
95 % 1 1 38642
90 % 142 275 18
70 % 1266 2478 2
50 % 2608 5107 1
40 % 2987 5756 1
30 % 3660 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures