Sequence Similarity Clusters for the Entities in PDB 1DFB

Entity #1 | Chains: L
IGG1-KAPPA 3D6 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60488
95 % 6 13 3272 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.6
PDBFlex
90 % 349 701 3
70 % 1145 2287 1
50 % 2343 4633 1
40 % 2343 4633 1
30 % 2676 5461 1
Entity #2 | Chains: H
IGG1-KAPPA 3D6 FAB (HEAVY CHAIN) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58978
95 % 1 1 41520
90 % 108 217 39
70 % 1139 2244 2
50 % 2344 4633 1
40 % 2344 4633 1
30 % 2677 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.