Sequence Similarity Clusters for the Entities in PDB 1DF5

Entity #1 | Chains: A
HIV-1 ENVELOPE GLYCOPROTEIN GP41 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 11335
95 % 12 13 3686 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 12 13 3754
70 % 16 17 1775
50 % 16 17 1804
40 % 16 17 1791
30 % 21 29 973

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QBZ 1 A, B, C PROTEIN (SIV GP41 ECTODOMAIN) SIV GP41 ECTODOMAIN 27-149 11723
2 1DF4 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG- GLY-GLY) 11676
3 1QR9 1 A GP41 ENVELOPE PROTEIN SUBDOMAIN N34(L6)C28 11676
4 1JQ0 1 A gp41 envelope protein N40(L6)C38 11723
5 1I5X 1 A TRANSMEMBRANE GLYCOPROTEIN (GP41) N34(L6)C28 11676
6 1K33 1 A Transmembrane glycoprotein GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) gp41 ectodomain core 11676
7 1K34 1 A Transmembrane glycoprotein GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) gp41 ectodomain core 11676
8 5CN0 1 A Envelope glycoprotein,AP2 The fusion protein of expression tag, C-terminus residues 35-70 from gp4 and Artificial inhibitor AP1 C-terminus (UNP RESIDUES 35-70) 32630
9 2OT5 1 A HIV-1 gp41 glycoprotein Subdomain N34(L6)C28 11676
10 1DLB 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG- GLY-GLY) 11676
11 1I5Y 1 A TRANSMEMBRANE GLYCOPROTEIN (GP41) N34(L6)C28 11676
12 1QR8 1 A GP41 ENVELOPE PROTEIN SUBDOMAIN N34(L6)C28 11676
13 5CMU 1 A, B, C Envelope glycoprotein,AP1 The fusion protein of expression tag, C-terminus residues 35-70 from gp4 and Artificial inhibitor AP1 C-terminus (UNP RESIDUES 35-70) 32630
14 3CP1 1 A Transmembrane Protein Fusion protein of UNP residues 536-579, Linker, and UNP residues 628-663 11676
15 1F23 1 A, B, C, D, E, F TRANSMEMBRANE GLYCOPROTEIN ECTODOMAIN 11676
16 3CYO 1 A Transmembrane protein FUSION PROTEIN OF UNP RESIDUES 536-579, LINKER, AND UNP RESIDUES 628-663 11676
17 5HFM 1 A, B, C, D, E, F Envelope glycoprotein gp160,gp41 CHR region UNP residues 539-581 11676
18 5HFL 1 A, B, C, D, E, F Envelope glycoprotein,gp41 CHR region UNP residues 35-70 11676
19 1SZT 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 CORE OF TRANSMEMBRANE SUBUNIT (GP41) RESIDUES 546 - 579 AND 628 - 655 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) 11676
20 1JPX 1 A, D, G gp41 envelope protein N40(L6)C38 11723
21 1DF5 1 A HIV-1 ENVELOPE GLYCOPROTEIN GP41 RESIDUES 1 - 34 AND 41 - 68 CONNECTED BY A SIX-RESIDUE LINKER (SER-GLY-GLY-ARG-GLY-GLY) 11676
22 3P30 1 A HIV-1 gp41 11676
23 2MK3 1 A Transmembrane glycoprotein, chimeric construct unp residues 93-126; unp residues 138-165 11676
24 1QCE 1 A, B, C PROTEIN (GP41) ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
25 2EZO 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
26 2EZP 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
27 2EZQ 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
28 2EZR 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723
29 2EZS 1 A, B, C GP41 ECTODOMAIN, RESIDUES 27 - 149, NUMBERED 1 - 123 11723