Sequence Similarity Clusters for the Entities in PDB 1DF5

Entity #1 | Chains: A
HIV-1 ENVELOPE GLYCOPROTEIN GP41 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 11439
95 % 12 13 3729 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 12 13 3794
70 % 16 17 1797
50 % 16 17 1828
40 % 16 17 1815
30 % 21 29 985

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures