Sequence Similarity Clusters for the Entities in PDB 1DF5

Entity #1 | Chains: A
HIV-1 ENVELOPE GLYCOPROTEIN GP41 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 12015
95 % 12 13 3935 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 12 13 3991
70 % 16 17 1887
50 % 16 17 1903
40 % 16 17 1892
30 % 21 29 1025

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures