Sequence Similarity Clusters for the Entities in PDB 1DF0

Entity #1 | Chains: A
M-CALPAIN protein, length: 700 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 25603
95 % 2 4 15695 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 4.9
PDBFlex
90 % 3 6 11093
70 % 3 6 10526
50 % 3 6 9532
40 % 3 6 8728
30 % 3 6 7682
Entity #2 | Chains: B
CALPAIN protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 13515
95 % 4 6 9651 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.7
PDBFlex
90 % 18 21 1701
70 % 18 21 1717
50 % 19 22 1568
40 % 19 22 1586
30 % 37 46 593

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures