Sequence Similarity Clusters for the Entities in PDB 1DEV

Entity #1 | Chains: A,C
MAD (mothers against decapentaplegic, Drosophila) homolog 2 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 22160
95 % 4 8 6816 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 4 8 6807
70 % 4 10 3777
50 % 4 10 3679
40 % 5 17 1936
30 % 5 17 1847
Entity #2 | Chains: B,D
Smad anchor for receptor activation protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29185
95 % 1 2 25508 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 2 24623
70 % 1 2 22321
50 % 1 2 19174
40 % 1 2 16929
30 % 1 2 14197

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures