Sequence Similarity Clusters for the Entities in PDB 1DEV

Entity #1 | Chains: A,C
MAD (mothers against decapentaplegic, Drosophila) homolog 2 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22177
95 % 3 6 7932 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 3 6 7878
70 % 3 8 4186
50 % 3 8 4027
40 % 3 8 3848
30 % 3 8 3580
Entity #2 | Chains: B,D
Smad anchor for receptor activation protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30754
95 % 1 2 25465 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 2 24608
70 % 1 2 22358
50 % 1 2 19358
40 % 1 2 17225
30 % 1 2 14772

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures