Sequence Similarity Clusters for the Entities in PDB 1DEV

Entity #1 | Chains: A,C
MAD (mothers against decapentaplegic, Drosophila) homolog 2 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16090
95 % 4 8 6613 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 4 8 6606
70 % 4 10 3691
50 % 4 10 3591
40 % 4 10 3456
30 % 4 10 3236
Entity #2 | Chains: B,D
Smad anchor for receptor activation protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31209
95 % 1 2 25839 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 2 24964
70 % 1 2 22662
50 % 1 2 19596
40 % 1 2 17434
30 % 1 2 14952

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures