Sequence Similarity Clusters for the Entities in PDB 1DEQ

Entity #1 | Chains: A,D,N,Q
FIBRINOGEN (ALPHA CHAIN) protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18110
95 % 1 1 16366 Flexibility: Medium
Max RMSD: 6.1, Avg RMSD: 4.2
PDBFlex
90 % 1 1 16050
70 % 1 1 14979
50 % 1 1 13181
40 % 1 1 11881
30 % 1 1 10288
Entity #2 | Chains: B,E,O,R
FIBRINOGEN (BETA CHAIN) protein, length: 408 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17881
95 % 1 1 16219 Flexibility: Medium
Max RMSD: 4.0, Avg RMSD: 3.1
PDBFlex
90 % 1 1 15911
70 % 1 1 14855
50 % 1 1 13080
40 % 1 1 11805
30 % 3 5 3427
Entity #3 | Chains: C,F,P,S
FIBRINOGEN (GAMMA CHAIN) protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17860
95 % 1 1 16203 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.8
PDBFlex
90 % 1 1 15895
70 % 2 2 8098
50 % 3 4 5105
40 % 3 4 4823
30 % 4 5 3427
Entity #4 | Chains: M,Z
FIBRINOGEN protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.