Sequence Similarity Clusters for the Entities in PDB 1DEQ

Entity #1 | Chains: A,D,N,Q
FIBRINOGEN (ALPHA CHAIN) protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17237
95 % 1 1 15610
90 % 1 1 15308
70 % 1 1 14298
50 % 1 1 12617
40 % 1 1 11382
30 % 1 1 9836
Entity #2 | Chains: B,E,O,R
FIBRINOGEN (BETA CHAIN) protein, length: 408 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 17013
95 % 1 1 15465
90 % 1 1 15171
70 % 1 1 14177
50 % 1 1 12521
40 % 1 1 11309
30 % 3 5 3295
Entity #3 | Chains: C,F,P,S
FIBRINOGEN (GAMMA CHAIN) protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 16993
95 % 1 1 15450
90 % 1 1 15156
70 % 2 2 7703
50 % 3 4 4859
40 % 3 4 4609
30 % 4 5 3295
Entity #4 | Chains: M,Z
FIBRINOGEN protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.