Sequence Similarity Clusters for the Entities in PDB 1DEQ

Entity #1 | Chains: A,D,N,Q
FIBRINOGEN (ALPHA CHAIN) protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18853
95 % 1 1 16961 Flexibility: Medium
Max RMSD: 6.1, Avg RMSD: 4.2
PDBFlex
90 % 1 1 16633
70 % 1 1 15512
50 % 1 1 13627
40 % 1 1 12273
30 % 1 1 10622
Entity #2 | Chains: B,E,O,R
FIBRINOGEN (BETA CHAIN) protein, length: 408 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18619
95 % 1 1 16812 Flexibility: Medium
Max RMSD: 4.0, Avg RMSD: 3.1
PDBFlex
90 % 1 1 16491
70 % 1 1 15386
50 % 1 1 13526
40 % 1 1 12196
30 % 3 5 3539
Entity #3 | Chains: C,F,P,S
FIBRINOGEN (GAMMA CHAIN) protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18597
95 % 1 1 16796 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.8
PDBFlex
90 % 1 1 16476
70 % 2 2 8379
50 % 3 4 5281
40 % 3 4 4980
30 % 4 5 3539
Entity #4 | Chains: M,Z
FIBRINOGEN protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures