Sequence Similarity Clusters for the Entities in PDB 1DEQ

Entity #1 | Chains: A,D,N,Q
FIBRINOGEN (ALPHA CHAIN) protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17537
95 % 1 1 15854 Flexibility: Medium
Max RMSD: 6.1, Avg RMSD: 4.2
PDBFlex
90 % 1 1 15542
70 % 1 1 14509
50 % 1 1 12787
40 % 1 1 11526
30 % 1 1 9971
Entity #2 | Chains: B,E,O,R
FIBRINOGEN (BETA CHAIN) protein, length: 408 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17311
95 % 1 1 15709 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 2.9
PDBFlex
90 % 1 1 15405
70 % 1 1 14387
50 % 1 1 12690
40 % 1 1 11453
30 % 3 5 3336
Entity #3 | Chains: C,F,P,S
FIBRINOGEN (GAMMA CHAIN) protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17291
95 % 1 1 15694 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.8
PDBFlex
90 % 1 1 15390
70 % 2 2 7835
50 % 3 4 4944
40 % 3 4 4675
30 % 4 5 3336
Entity #4 | Chains: M,Z
FIBRINOGEN protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.