Sequence Similarity Clusters for the Entities in PDB 1DEQ

Entity #1 | Chains: A,D,N,Q
FIBRINOGEN (ALPHA CHAIN) protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18425
95 % 1 1 16613 Flexibility: Medium
Max RMSD: 6.1, Avg RMSD: 4.2
PDBFlex
90 % 1 1 16298
70 % 1 1 15219
50 % 1 1 13381
40 % 1 1 12056
30 % 1 1 10440
Entity #2 | Chains: B,E,O,R
FIBRINOGEN (BETA CHAIN) protein, length: 408 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18195
95 % 1 1 16466 Flexibility: Medium
Max RMSD: 4.0, Avg RMSD: 3.1
PDBFlex
90 % 1 1 16159
70 % 1 1 15095
50 % 1 1 13281
40 % 1 1 11980
30 % 3 5 3468
Entity #3 | Chains: C,F,P,S
FIBRINOGEN (GAMMA CHAIN) protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18174
95 % 1 1 16450 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.8
PDBFlex
90 % 1 1 16143
70 % 2 2 8205
50 % 3 4 5179
40 % 3 4 4890
30 % 4 5 3468
Entity #4 | Chains: M,Z
FIBRINOGEN protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures