Sequence Similarity Clusters for the Entities in PDB 1DEQ

Entity #1 | Chains: A,D,N,Q
FIBRINOGEN (ALPHA CHAIN) protein, length: 390 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24436
95 % 1 1 21668 Flexibility: Medium
Max RMSD: 6.1, Avg RMSD: 4.2
PDBFlex
90 % 1 1 21014
70 % 1 1 19253
50 % 1 1 16657
40 % 1 1 14732
30 % 1 1 12342
Entity #2 | Chains: B,E,O,R
FIBRINOGEN (BETA CHAIN) protein, length: 408 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24428
95 % 1 1 20270 Flexibility: Medium
Max RMSD: 4.0, Avg RMSD: 3.1
PDBFlex
90 % 1 1 19685
70 % 1 1 18068
50 % 1 1 15694
40 % 1 1 13933
30 % 3 5 3584
Entity #3 | Chains: C,F,P,S
FIBRINOGEN (GAMMA CHAIN) protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22659
95 % 1 1 20271 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.8
PDBFlex
90 % 1 1 19686
70 % 2 2 9392
50 % 3 4 5777
40 % 3 4 5104
30 % 4 5 3584
Entity #4 | Chains: M,Z
FIBRINOGEN protein, length: 90 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures