Sequence Similarity Clusters for the Entities in PDB 1DEJ

Entity #1 | Chains: S
GELSOLIN protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 7524
95 % 16 29 1834 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 16 29 1872
70 % 16 29 1901
50 % 16 29 1928
40 % 16 29 1930
30 % 16 29 1863
Entity #2 | Chains: A
CHIMERIC ACTIN protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54543
95 % 62 193 9
90 % 64 198 10
70 % 67 203 15
50 % 67 210 16
40 % 68 229 23
30 % 69 249 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures