Sequence Similarity Clusters for the Entities in PDB 1DEE

Entity #1 | Chains: A,C,E
IGM RF 2A2 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27582
95 % 95 165 69 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.3
PDBFlex
90 % 470 701 3
70 % 1519 2287 1
50 % 3081 4633 1
40 % 3081 4633 1
30 % 3614 5461 1
Entity #2 | Chains: B,D,F
IGM RF 2A2 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27329
95 % 2 2 14237 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 2 13994
70 % 5 9 4338
50 % 3082 4633 1
40 % 3082 4633 1
30 % 3615 5461 1
Entity #3 | Chains: G,H
IMMUNOGLOBULIN G BINDING PROTEIN A protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48494
95 % 4 4 15023 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 4 4 14742
70 % 17 37 1143
50 % 17 37 1182
40 % 17 37 1194
30 % 17 37 1168

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.