Sequence Similarity Clusters for the Entities in PDB 1DEE

Entity #1 | Chains: A,C,E
IGM RF 2A2 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27142
95 % 95 164 69 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 2.3
PDBFlex
90 % 466 693 3
70 % 1507 2264 1
50 % 3057 4587 1
40 % 3057 4587 1
30 % 3575 5394 1
Entity #2 | Chains: B,D,F
IGM RF 2A2 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26893
95 % 2 2 14035 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 2 13786
70 % 5 9 4293
50 % 3058 4587 1
40 % 3058 4587 1
30 % 3576 5394 1
Entity #3 | Chains: G,H
IMMUNOGLOBULIN G BINDING PROTEIN A protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47876
95 % 4 4 14793 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 4 4 14510
70 % 17 37 1132
50 % 17 37 1173
40 % 17 37 1182
30 % 17 37 1156

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.