Sequence Similarity Clusters for the Entities in PDB 1DEE

Entity #1 | Chains: A,C,E
IGM RF 2A2 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27908
95 % 101 171 68 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 491 729 3
70 % 1576 2362 1
50 % 3192 4781 1
40 % 3192 4781 1
30 % 3745 5635 1
Entity #2 | Chains: B,D,F
IGM RF 2A2 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27654
95 % 2 2 14420 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 2 14175
70 % 5 9 4399
50 % 3193 4781 1
40 % 3193 4781 1
30 % 3746 5635 1
Entity #3 | Chains: G,H
IMMUNOGLOBULIN G BINDING PROTEIN A protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49102
95 % 4 4 15203 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 4 4 14924
70 % 17 37 1162
50 % 17 37 1199
40 % 17 37 1212
30 % 17 37 1186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures