Sequence Similarity Clusters for the Entities in PDB 1DEE

Entity #1 | Chains: A,C,E
IGM RF 2A2 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 8992
95 % 115 187 66 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 514 761 2
70 % 1675 2516 1
50 % 3398 5101 1
40 % 3856 5750 1
30 % 4801 7168 1
Entity #2 | Chains: B,D,F
IGM RF 2A2 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25138
95 % 2 2 14256 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 2 13986
70 % 1644 2475 2
50 % 3399 5101 1
40 % 3857 5750 1
30 % 4802 7168 1
Entity #3 | Chains: G,H
IMMUNOGLOBULIN G BINDING PROTEIN A protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30500
95 % 8 8 7830 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 8 8 7762
70 % 21 41 1093
50 % 21 41 1141
40 % 21 41 1146
30 % 21 41 1138

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures