Sequence Similarity Clusters for the Entities in PDB 1DED

Entity #1 | Chains: A,B
CYCLODEXTRIN GLUCANOTRANSFERASE protein, length: 686 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16022
95 % 6 11 2641 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 6 11 2686
70 % 13 48 872
50 % 15 52 863
40 % 17 54 867
30 % 17 54 852

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.