Sequence Similarity Clusters for the Entities in PDB 1DED

Entity #1 | Chains: A,B
CYCLODEXTRIN GLUCANOTRANSFERASE protein, length: 686 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16552
95 % 6 11 2727 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 6 11 2773
70 % 13 48 889
50 % 15 52 884
40 % 17 54 887
30 % 17 54 873

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.