Sequence Similarity Clusters for the Entities in PDB 1DE9

Entity #1 | Chains: U,X
5'-d(*CP*TP*AP*C)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: V,Y
5'-d(P*(3DR)P*GP*AP*TP*C)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: W,Z
5'-d(*GP*AP*TP*CP*GP*GP*TP*AP*G)-3' dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12105
95 % 18 20 1256 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 18 20 1285
70 % 19 21 1209
50 % 20 22 1236
40 % 38 47 649
30 % 42 52 601

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.