Sequence Similarity Clusters for the Entities in PDB 1DE9

Entity #1 | Chains: U,X
5'-d(*CP*TP*AP*C)-3' dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: V,Y
5'-d(P*(3DR)P*GP*AP*TP*C)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: W,Z
5'-d(*GP*AP*TP*CP*GP*GP*TP*AP*G)-3' dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12438
95 % 18 20 1284 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 18 20 1315
70 % 19 21 1241
50 % 20 22 1263
40 % 38 47 668
30 % 42 52 610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures