Sequence Similarity Clusters for the Entities in PDB 1DE7

Entity #1 | Chains: J,L
ALPHA-THROMBIN (LIGHT CHAIN) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 188 334 52
95 % 190 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 190 342 67
70 % 190 342 79
50 % 190 342 111
40 % 190 342 134
30 % 190 342 147
Entity #2 | Chains: H,K
ALPHA-THROMBIN (HEAVY CHAIN) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 185 332 53
95 % 207 378 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 209 385 56
70 % 209 409 47
50 % 209 409 85
40 % 1164 1873 4
30 % 1170 1887 7
Entity #3 | Chains: A,B
FACTOR XIII ACTIVATION PEPTIDE (28-37) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures