Sequence Similarity Clusters for the Entities in PDB 1DE7

Entity #1 | Chains: J,L
ALPHA-THROMBIN (LIGHT CHAIN) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 187 335 45
95 % 187 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 187 336 65
70 % 187 338 76
50 % 187 338 100
40 % 187 338 124
30 % 187 338 135
Entity #2 | Chains: H,K
ALPHA-THROMBIN (HEAVY CHAIN) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 166 290 55
95 % 204 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 206 381 38
70 % 206 405 43
50 % 206 405 78
40 % 1059 1682 4
30 % 1137 1831 6
Entity #3 | Chains: A,B
FACTOR XIII ACTIVATION PEPTIDE (28-37) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.