Sequence Similarity Clusters for the Entities in PDB 1DE7

Entity #1 | Chains: J,L
ALPHA-THROMBIN (LIGHT CHAIN) protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 188 335 45
95 % 188 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 188 336 66
70 % 188 338 78
50 % 188 338 107
40 % 188 338 131
30 % 188 338 136
Entity #2 | Chains: H,K
ALPHA-THROMBIN (HEAVY CHAIN) protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 167 290 57
95 % 205 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 207 381 39
70 % 207 405 46
50 % 207 405 84
40 % 1068 1698 4
30 % 1146 1848 6
Entity #3 | Chains: A,B
FACTOR XIII ACTIVATION PEPTIDE (28-37) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures