Sequence Similarity Clusters for the Entities in PDB 1DE4

Entity #1 | Chains: A,D,G
HEMOCHROMATOSIS PROTEIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15634
95 % 2 2 14672 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 2 14443
70 % 2 2 13569
50 % 2 2 12057
40 % 2 2 10915
30 % 801 919 15
Entity #2 | Chains: B,E,H
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 567 632 2
95 % 608 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 617 685 4
70 % 824 936 4
50 % 839 958 3
40 % 839 958 7
30 % 839 958 12
Entity #3 | Chains: C,F,I
TRANSFERRIN RECEPTOR protein, length: 640 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 6178
95 % 2 8 2840 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 8 2888
70 % 2 8 2861
50 % 2 8 2819
40 % 2 8 2768
30 % 2 8 2600

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures