Sequence Similarity Clusters for the Entities in PDB 1DE4

Entity #1 | Chains: A,D,G
HEMOCHROMATOSIS PROTEIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15390
95 % 2 2 14462 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 2 14239
70 % 2 2 13388
50 % 2 2 11899
40 % 2 2 10785
30 % 795 909 15
Entity #2 | Chains: B,E,H
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 561 624 2
95 % 602 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 611 677 4
70 % 816 924 4
50 % 831 946 3
40 % 831 946 7
30 % 831 946 12
Entity #3 | Chains: C,F,I
TRANSFERRIN RECEPTOR protein, length: 640 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 6086
95 % 2 8 2800 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 8 2847
70 % 2 8 2826
50 % 2 8 2786
40 % 2 8 2737
30 % 2 8 2573

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures