Sequence Similarity Clusters for the Entities in PDB 1DE4

Entity #1 | Chains: A,D,G
HEMOCHROMATOSIS PROTEIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14893
95 % 2 2 14051 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 2 13833
70 % 2 2 13027
50 % 2 2 11584
40 % 2 2 10506
30 % 771 881 15
Entity #2 | Chains: B,E,H
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 547 607 2
95 % 588 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 597 660 4
70 % 795 898 4
50 % 810 920 3
40 % 810 920 8
30 % 810 920 12
Entity #3 | Chains: C,F,I
TRANSFERRIN RECEPTOR protein, length: 640 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 5884
95 % 2 8 2702 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 2 8 2746
70 % 2 8 2725
50 % 2 8 2693
40 % 2 8 2653
30 % 2 8 2493

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.