Sequence Similarity Clusters for the Entities in PDB 1DE4

Entity #1 | Chains: A,D,G
HEMOCHROMATOSIS PROTEIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14430
95 % 2 2 13620 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 2 13404
70 % 2 2 12600
50 % 2 2 11235
40 % 2 2 10186
30 % 745 851 15
Entity #2 | Chains: B,E,H
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 532 588 2
95 % 572 631 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 581 640 4
70 % 771 870 4
50 % 786 892 4
40 % 786 892 8
30 % 786 892 14
Entity #3 | Chains: C,F,I
TRANSFERRIN RECEPTOR protein, length: 640 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 5684
95 % 2 8 2623 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 2 8 2671
70 % 2 8 2648
50 % 2 8 2615
40 % 2 8 2588
30 % 2 8 2424

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.