Sequence Similarity Clusters for the Entities in PDB 1DDW

Entity #1 | Chains: A
GLGF-DOMAIN PROTEIN HOMER protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39916
95 % 1 2 33672 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 32222
70 % 1 4 10374
50 % 1 4 9342
40 % 1 4 8448
30 % 17 26 1177

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures