Sequence Similarity Clusters for the Entities in PDB 1DDN

Entity #1 | Chains: E
33 BASE DNA CONTAINING TOXIN OPERATOR dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
33 BASE DNA CONTAINING TOXIN OPERATOR dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C,D
DIPHTHERIA TOX REPRESSOR protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15644
95 % 17 19 2033 Flexibility: Medium
Max RMSD: 17.8, Avg RMSD: 4.9
PDBFlex
90 % 17 19 2083
70 % 17 19 2095
50 % 19 21 1414
40 % 19 21 1421
30 % 19 21 1397

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures