Sequence Similarity Clusters for the Entities in PDB 1DDN

Entity #1 | Chains: E
33 BASE DNA CONTAINING TOXIN OPERATOR dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
33 BASE DNA CONTAINING TOXIN OPERATOR dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C,D
DIPHTHERIA TOX REPRESSOR protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15261
95 % 17 19 1965 Flexibility: Medium
Max RMSD: 17.8, Avg RMSD: 4.9
PDBFlex
90 % 17 19 2013
70 % 17 19 2032
50 % 19 21 1383
40 % 19 21 1389
30 % 19 21 1367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.