Sequence Similarity Clusters for the Entities in PDB 1DDN

Entity #1 | Chains: E
33 BASE DNA CONTAINING TOXIN OPERATOR dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
33 BASE DNA CONTAINING TOXIN OPERATOR dna, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C,D
DIPHTHERIA TOX REPRESSOR protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 13922
95 % 17 19 1777
90 % 17 19 1818
70 % 17 19 1835
50 % 19 21 1265
40 % 19 21 1282
30 % 19 21 1262

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.