Sequence Similarity Clusters for the Entities in PDB 1DDL

Entity #1 | Chains: D
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
RNA (5'-R(P*UP*U)-3') rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C
DESMODIUM YELLOW MOTTLE VIRUS protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27368
95 % 1 1 24008 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.4
PDBFlex
90 % 1 1 23231
70 % 1 1 21146
50 % 1 1 18189
40 % 1 9 2314
30 % 1 9 2172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures