Sequence Similarity Clusters for the Entities in PDB 1DDL

Entity #1 | Chains: D
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
RNA (5'-R(P*UP*U)-3') rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C
DESMODIUM YELLOW MOTTLE VIRUS protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25753
95 % 1 1 21425
90 % 1 1 20747
70 % 1 1 19046
50 % 1 1 16560
40 % 1 9 2027
30 % 1 9 1944

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.