Sequence Similarity Clusters for the Entities in PDB 1DDL

Entity #1 | Chains: D
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
RNA (5'-R(P*UP*U)-3') rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C
DESMODIUM YELLOW MOTTLE VIRUS protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29150
95 % 1 1 24209 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.4
PDBFlex
90 % 1 1 23387
70 % 1 1 21316
50 % 1 1 18423
40 % 1 9 2298
30 % 1 9 2192

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures