Sequence Similarity Clusters for the Entities in PDB 1DDJ

Entity #1 | Chains: A,B,C,D
PLASMINOGEN protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8861
95 % 3 10 3292 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 3 10 3338
70 % 3 10 3302
50 % 3 10 3217
40 % 1068 1695 4
30 % 1146 1845 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.