Sequence Similarity Clusters for the Entities in PDB 1DDJ

Entity #1 | Chains: A,B,C,D
PLASMINOGEN protein, length: 247 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 9236
95 % 3 10 3429 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 3 10 3481
70 % 3 10 3437
50 % 3 10 3349
40 % 1164 1863 4
30 % 1171 1885 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures