Sequence Similarity Clusters for the Entities in PDB 1DDH

Entity #1 | Chains: A
MHC CLASS I H-2DD HEAVY CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54419
95 % 7 7 9784
90 % 7 7 9672
70 % 640 664 7
50 % 642 669 7
40 % 684 717 10
30 % 783 834 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 13222
95 % 200 213 66
90 % 200 213 70
70 % 811 859 5
50 % 826 879 5
40 % 826 879 9
30 % 826 879 14
Entity #3 | Chains: P
HUMAN IMMUNODEFICIENCY VIRUS ENVELOPE GLYCOPROTEIN 120 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.