Sequence Similarity Clusters for the Entities in PDB 1DDH

Entity #1 | Chains: A
MHC CLASS I H-2DD HEAVY CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58345
95 % 13 14 2873 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.8
PDBFlex
90 % 13 14 2918
70 % 698 727 6
50 % 700 732 6
40 % 745 783 10
30 % 853 909 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14319
95 % 216 230 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 216 230 66
70 % 871 924 4
50 % 888 946 3
40 % 888 946 7
30 % 888 946 12
Entity #3 | Chains: P
HUMAN IMMUNODEFICIENCY VIRUS ENVELOPE GLYCOPROTEIN 120 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures