Sequence Similarity Clusters for the Entities in PDB 1DDH

Entity #1 | Chains: A
MHC CLASS I H-2DD HEAVY CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57142
95 % 13 14 2802 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.8
PDBFlex
90 % 13 14 2849
70 % 687 716 6
50 % 689 721 6
40 % 734 772 10
30 % 840 896 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13990
95 % 214 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 214 228 65
70 % 860 912 4
50 % 877 934 3
40 % 877 934 7
30 % 877 934 12
Entity #3 | Chains: P
HUMAN IMMUNODEFICIENCY VIRUS ENVELOPE GLYCOPROTEIN 120 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.