Sequence Similarity Clusters for the Entities in PDB 1DDH

Entity #1 | Chains: A
MHC CLASS I H-2DD HEAVY CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43629
95 % 13 14 3008 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.7
PDBFlex
90 % 13 14 3062
70 % 716 746 6
50 % 727 760 7
40 % 772 812 9
30 % 882 939 13
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 177 189 81
95 % 220 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 220 234 66
70 % 899 953 4
50 % 916 975 3
40 % 916 975 6
30 % 916 975 9
Entity #3 | Chains: P
HUMAN IMMUNODEFICIENCY VIRUS ENVELOPE GLYCOPROTEIN 120 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures