Sequence Similarity Clusters for the Entities in PDB 1DDH

Entity #1 | Chains: A
MHC CLASS I H-2DD HEAVY CHAIN protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56414
95 % 7 7 10208
90 % 7 7 10098
70 % 667 692 6
50 % 669 697 6
40 % 714 748 10
30 % 816 868 15
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 13769
95 % 204 217 64
90 % 204 217 68
70 % 837 885 4
50 % 854 907 3
40 % 854 907 9
30 % 854 907 14
Entity #3 | Chains: P
HUMAN IMMUNODEFICIENCY VIRUS ENVELOPE GLYCOPROTEIN 120 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.