Sequence Similarity Clusters for the Entities in PDB 1DDE

Entity #1 | Chains: A
DNA PRIMASE protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12284
95 % 2 4 8831 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 2 4 8746
70 % 2 4 8421
50 % 2 4 7678
40 % 2 4 7071
30 % 2 8 3728

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures