Sequence Similarity Clusters for the Entities in PDB 1DD4

Entity #1 | Chains: A,B
50S RIBOSOMAL PROTEIN L7/L12 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9515
95 % 2 4 9647 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 4 9543
70 % 2 4 9118
50 % 2 19 1702
40 % 2 19 1707
30 % 2 20 1580
Entity #2 | Chains: C,D
50S RIBOSOMAL PROTEIN L7/L12 protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48748
95 % 1 1 36461
90 % 1 1 34833
70 % 1 1 31009
50 % 1 1 26528
40 % 1 1 23448
30 % 1 1 19937

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.