Sequence Similarity Clusters for the Entities in PDB 1DD4

Entity #1 | Chains: A,B
50S RIBOSOMAL PROTEIN L7/L12 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9647
95 % 2 4 9768 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 4 9653
70 % 2 4 9205
50 % 2 19 1727
40 % 2 19 1733
30 % 2 20 1596
Entity #2 | Chains: C,D
50S RIBOSOMAL PROTEIN L7/L12 protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49357
95 % 1 1 36924 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 35253
70 % 1 1 31342
50 % 1 1 26808
40 % 1 1 23684
30 % 1 1 20137

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures