Sequence Similarity Clusters for the Entities in PDB 1DD4

Entity #1 | Chains: A,B
50S RIBOSOMAL PROTEIN L7/L12 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10177
95 % 2 4 8785 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 2 4 8704
70 % 2 4 8384
50 % 2 19 1813
40 % 2 19 1767
30 % 2 20 1635
Entity #2 | Chains: C,D
50S RIBOSOMAL PROTEIN L7/L12 protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38826
95 % 1 1 32845 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 31453
70 % 1 1 28126
50 % 1 1 24058
40 % 1 1 21175
30 % 1 1 17669

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures