Sequence Similarity Clusters for the Entities in PDB 1DD3

Entity #1 | Chains: A,B
50S RIBOSOMAL PROTEIN L7/L12 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10005
95 % 1 4 10068 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 4 9948
70 % 1 4 9473
50 % 1 19 1789
40 % 1 19 1790
30 % 1 20 1654
Entity #2 | Chains: C,D
50S RIBOSOMAL PROTEIN L7/L12 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 2722
95 % 2 4 3370 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 2 4 3416
70 % 2 4 3369
50 % 2 4 3281
40 % 2 4 3192
30 % 2 4 2990

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures