Sequence Similarity Clusters for the Entities in PDB 1DCE

Entity #1 | Chains: A,C
PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT) protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29265
95 % 1 2 25572 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.2
PDBFlex
90 % 1 2 24686
70 % 1 2 22367
50 % 1 2 19211
40 % 1 2 16982
30 % 1 2 14242
Entity #2 | Chains: B,D
PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT) protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 21 2635
95 % 15 21 2954 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 15 21 3006
70 % 15 21 2962
50 % 15 21 2921
40 % 15 21 2844
30 % 15 21 2631

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures