Sequence Similarity Clusters for the Entities in PDB 1DCE

Entity #1 | Chains: A,C
PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT) protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25309
95 % 1 2 21537 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.2
PDBFlex
90 % 1 2 20928
70 % 1 2 19216
50 % 1 2 16702
40 % 1 2 14916
30 % 1 2 12800
Entity #2 | Chains: B,D
PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT) protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 21 2174
95 % 15 21 2807 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 15 21 2854
70 % 15 21 2828
50 % 15 21 2788
40 % 15 21 2742
30 % 15 21 2567

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures