Sequence Similarity Clusters for the Entities in PDB 1DCE

Entity #1 | Chains: A,C
PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT) protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24961
95 % 1 2 21263 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.2
PDBFlex
90 % 1 2 20663
70 % 1 2 18972
50 % 1 2 16504
40 % 1 2 14744
30 % 1 2 12646
Entity #2 | Chains: B,D
PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT) protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 21 2117
95 % 15 21 2747 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 15 21 2792
70 % 15 21 2769
50 % 15 21 2731
40 % 15 21 2694
30 % 15 21 2527

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.