Sequence Similarity Clusters for the Entities in PDB 1DCE

Entity #1 | Chains: A,C
PROTEIN (RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT) protein, length: 567 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24604
95 % 1 2 20936 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 2 20351
70 % 1 2 18740
50 % 1 2 16311
40 % 1 2 14582
30 % 1 2 12511
Entity #2 | Chains: B,D
PROTEIN (RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT) protein, length: 331 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 21 2094
95 % 15 21 2719 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 15 21 2764
70 % 15 21 2745
50 % 15 21 2711
40 % 15 21 2672
30 % 15 21 2506

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.