Sequence Similarity Clusters for the Entities in PDB 1DBM

Entity #1 | Chains: L
IGG1-KAPPA DB3 FAB (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 12800
95 % 127 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 136 155 150
70 % 1473 2287 1
50 % 2992 4633 1
40 % 2992 4633 1
30 % 3489 5461 1
Entity #2 | Chains: H
IGG1-KAPPA DB3 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 12762
95 % 4 6 12301 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 6 12116
70 % 1447 2244 2
50 % 2993 4633 1
40 % 2993 4633 1
30 % 3490 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.