Sequence Similarity Clusters for the Entities in PDB 1DBB

Entity #1 | Chains: L
IGG1-KAPPA DB3 FAB (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12913
95 % 120 146 145 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 129 156 146
70 % 1438 2327 1
50 % 2922 4713 1
40 % 2922 4713 1
30 % 3395 5567 1
Entity #2 | Chains: H
IGG1-KAPPA DB3 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12875
95 % 1 6 12400 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 6 12208
70 % 1412 2280 2
50 % 2923 4713 1
40 % 2923 4713 1
30 % 3396 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.