Sequence Similarity Clusters for the Entities in PDB 1DBB

Entity #1 | Chains: L
IGG1-KAPPA DB3 FAB (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13419
95 % 120 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 129 158 148
70 % 1541 2474 1
50 % 3130 5011 1
40 % 3130 5011 1
30 % 3667 5941 1
Entity #2 | Chains: H
IGG1-KAPPA DB3 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13381
95 % 1 6 12852 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 6 12652
70 % 1512 2424 2
50 % 3131 5011 1
40 % 3131 5011 1
30 % 3668 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures