Sequence Similarity Clusters for the Entities in PDB 1DBA

Entity #1 | Chains: L
IGG1-KAPPA DB3 FAB (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 12409
95 % 123 143 147
90 % 132 153 149
70 % 1182 1822 2
50 % 2884 4489 1
40 % 2884 4489 1
30 % 3348 5290 1
Entity #2 | Chains: H
IGG1-KAPPA DB3 FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 12369
95 % 3 6 11910 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 6 11727
70 % 1394 2172 1
50 % 2885 4489 1
40 % 2885 4489 1
30 % 3349 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.