Sequence Similarity Clusters for the Entities in PDB 1DAZ

Entity #1 | Chains: C,D
HIV-1 PROTEASE (RETROPEPSIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23425
95 % 193 574 2 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 198 636 2
70 % 209 663 5
50 % 213 689 4
40 % 213 699 7
30 % 213 701 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.