Sequence Similarity Clusters for the Entities in PDB 1DAZ

Entity #1 | Chains: C,D
HIV-1 PROTEASE (RETROPEPSIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24081
95 % 195 580 2 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 200 642 2
70 % 211 669 5
50 % 215 695 5
40 % 215 705 9
30 % 215 707 14

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures