Sequence Similarity Clusters for the Entities in PDB 1DAP

Entity #1 | Chains: A,B
DIAMINOPIMELIC ACID DEHYDROGENASE protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 11400
95 % 4 6 6592 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.5
PDBFlex
90 % 4 6 6583
70 % 4 6 6384
50 % 4 6 5955
40 % 11 15 2116
30 % 14 19 1472

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures