Sequence Similarity Clusters for the Entities in PDB 1DAP

Entity #1 | Chains: A,B
DIAMINOPIMELIC ACID DEHYDROGENASE protein, length: 320 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10145
95 % 4 6 6257 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.6
PDBFlex
90 % 4 6 6240
70 % 4 6 6101
50 % 4 6 5710
40 % 11 15 2011
30 % 14 19 1398

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.