Sequence Similarity Clusters for the Entities in PDB 1DAN

Entity #1 | Chains: L
BLOOD COAGULATION FACTOR VIIA light chain protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 32 1270
95 % 8 32 1719 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 8 32 1751
70 % 8 32 1773
50 % 26 74 739
40 % 26 74 769
30 % 26 74 763
Entity #2 | Chains: H
BLOOD COAGULATION FACTOR VIIA heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 97 264
95 % 48 101 355 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 48 101 379
70 % 48 101 416
50 % 48 101 499
40 % 1025 1682 4
30 % 1101 1831 6
Entity #3 | Chains: T
SOLUBLE TISSUE FACTOR protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29044
95 % 2 3 24058 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 23289
70 % 2 3 21284
50 % 2 3 18452
40 % 2 3 16440
30 % 2 3 14085
Entity #4 | Chains: U
SOLUBLE TISSUE FACTOR protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 44898
95 % 2 3 23593 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 3 22835
70 % 2 3 20871
50 % 2 3 18100
40 % 2 3 16132
30 % 2 3 13803

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.