Sequence Similarity Clusters for the Entities in PDB 1DAN

Entity #1 | Chains: L
BLOOD COAGULATION FACTOR VIIA light chain protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 32 1315
95 % 8 32 1762 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 8 32 1799
70 % 8 32 1825
50 % 26 74 760
40 % 26 74 796
30 % 26 74 788
Entity #2 | Chains: H
BLOOD COAGULATION FACTOR VIIA heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 97 293
95 % 48 101 376 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 48 101 404
70 % 48 101 438
50 % 48 101 509
40 % 1034 1698 4
30 % 1110 1848 6
Entity #3 | Chains: T
SOLUBLE TISSUE FACTOR protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29946
95 % 2 3 24828 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 24010
70 % 2 3 21831
50 % 2 3 18884
40 % 2 3 16820
30 % 2 3 14409
Entity #4 | Chains: U
SOLUBLE TISSUE FACTOR protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46139
95 % 2 3 24350 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 3 23547
70 % 2 3 21421
50 % 2 3 18535
40 % 2 3 16512
30 % 2 3 14127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures