Sequence Similarity Clusters for the Entities in PDB 1DAN

Entity #1 | Chains: L
BLOOD COAGULATION FACTOR VIIA light chain protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 32 1283
95 % 8 32 1737 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 8 32 1772
70 % 8 32 1795
50 % 26 74 746
40 % 26 74 781
30 % 26 74 773
Entity #2 | Chains: H
BLOOD COAGULATION FACTOR VIIA heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 97 268
95 % 48 101 360 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 48 101 384
70 % 48 101 421
50 % 48 101 501
40 % 1027 1684 4
30 % 1103 1833 6
Entity #3 | Chains: T
SOLUBLE TISSUE FACTOR protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29530
95 % 2 3 24485 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 23690
70 % 2 3 21565
50 % 2 3 18670
40 % 2 3 16629
30 % 2 3 14244
Entity #4 | Chains: U
SOLUBLE TISSUE FACTOR protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45494
95 % 2 3 24012 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 3 23231
70 % 2 3 21154
50 % 2 3 18321
40 % 2 3 16322
30 % 2 3 13963

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.