Sequence Similarity Clusters for the Entities in PDB 1DAN

Entity #1 | Chains: L
BLOOD COAGULATION FACTOR VIIA light chain protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 32 1515
95 % 8 32 1791 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 8 32 1834
70 % 8 32 1845
50 % 26 74 791
40 % 26 74 821
30 % 26 79 769
Entity #2 | Chains: H
BLOOD COAGULATION FACTOR VIIA heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 97 350
95 % 48 101 419 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 48 101 454
70 % 48 101 485
50 % 48 101 537
40 % 1127 1873 4
30 % 1133 1887 7
Entity #3 | Chains: T
SOLUBLE TISSUE FACTOR protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26596
95 % 2 3 25055 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 3 24196
70 % 2 3 21956
50 % 2 3 18858
40 % 2 3 16657
30 % 2 3 13963
Entity #4 | Chains: U
SOLUBLE TISSUE FACTOR protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41581
95 % 2 3 22140 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 2 3 21459
70 % 2 3 19624
50 % 2 3 16943
40 % 2 3 14984
30 % 2 3 12543

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures