Sequence Similarity Clusters for the Entities in PDB 1D9K

Entity #1 | Chains: A,E
T-CELL RECEPTOR D10 (ALPHA CHAIN) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32358
95 % 1 1 27954 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 26890
70 % 1 5 7657
50 % 1 5 7036
40 % 169 363 27
30 % 2704 7269 1
Entity #2 | Chains: B,F
T-CELL RECEPTOR D10 (BETA CHAIN) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35082
95 % 1 1 33960 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 11 24 1040
70 % 11 24 1078
50 % 11 25 1082
40 % 11 25 1096
30 % 2705 7269 1
Entity #3 | Chains: C,G
MHC I-AK A CHAIN (ALPHA CHAIN) protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 22165
95 % 4 16 2460 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 7 26 1435
70 % 13 48 705
50 % 48 170 175
40 % 48 170 188
30 % 95 353 85
Entity #4 | Chains: D,H
MHC I-AK B CHAIN (BETA CHAIN) protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31852
95 % 2 7 7945 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 6 17 3119
70 % 48 169 151
50 % 48 171 174
40 % 48 171 187
30 % 96 353 85
Entity #5 | Chains: P,Q
CONALBUMIN PEPTIDE protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures