Sequence Similarity Clusters for the Entities in PDB 1D9K

Entity #1 | Chains: A,E
T-CELL RECEPTOR D10 (ALPHA CHAIN) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47131
95 % 1 1 35278 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 33692
70 % 1 5 7802
50 % 1 5 7178
40 % 442 936 5
30 % 491 1065 7
Entity #2 | Chains: B,F
T-CELL RECEPTOR D10 (BETA CHAIN) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47022
95 % 1 1 35197 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 11 24 1020
70 % 11 24 1060
50 % 11 25 1061
40 % 11 25 1072
30 % 492 1065 7
Entity #3 | Chains: C,G
MHC I-AK A CHAIN (ALPHA CHAIN) protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21994
95 % 4 16 2373 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 7 26 1384
70 % 13 48 691
50 % 45 161 177
40 % 45 161 192
30 % 89 334 81
Entity #4 | Chains: D,H
MHC I-AK B CHAIN (BETA CHAIN) protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42825
95 % 2 7 7979 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 6 17 3031
70 % 44 152 156
50 % 45 161 176
40 % 45 161 191
30 % 90 334 81
Entity #5 | Chains: P,Q
CONALBUMIN PEPTIDE protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures