Sequence Similarity Clusters for the Entities in PDB 1D9K

Entity #1 | Chains: A,E
T-CELL RECEPTOR D10 (ALPHA CHAIN) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46447
95 % 1 1 34778 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 33236
70 % 1 5 7700
50 % 1 5 7078
40 % 439 929 5
30 % 487 1056 7
Entity #2 | Chains: B,F
T-CELL RECEPTOR D10 (BETA CHAIN) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46340
95 % 1 1 34700 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 11 24 1005
70 % 11 24 1048
50 % 11 25 1042
40 % 11 25 1053
30 % 488 1056 7
Entity #3 | Chains: C,G
MHC I-AK A CHAIN (ALPHA CHAIN) protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 21633
95 % 4 16 2332 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 4 23 1470
70 % 9 44 756
50 % 36 149 179
40 % 36 149 196
30 % 71 310 99
Entity #4 | Chains: D,H
MHC I-AK B CHAIN (BETA CHAIN) protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42186
95 % 2 7 7863 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 14 3597
70 % 35 140 163
50 % 36 149 178
40 % 36 149 195
30 % 72 310 99
Entity #5 | Chains: P,Q
CONALBUMIN PEPTIDE protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.