Sequence Similarity Clusters for the Entities in PDB 1D9K

Entity #1 | Chains: A,E
T-CELL RECEPTOR D10 (ALPHA CHAIN) protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48023
95 % 1 1 35899 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 34259
70 % 1 5 7964
50 % 1 5 7330
40 % 446 956 5
30 % 495 1085 7
Entity #2 | Chains: B,F
T-CELL RECEPTOR D10 (BETA CHAIN) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47913
95 % 1 1 35817 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 11 24 1034
70 % 11 24 1077
50 % 11 25 1077
40 % 11 25 1090
30 % 496 1085 7
Entity #3 | Chains: C,G
MHC I-AK A CHAIN (ALPHA CHAIN) protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 22513
95 % 4 16 2444 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 7 26 1420
70 % 13 48 703
50 % 45 161 184
40 % 45 161 195
30 % 89 334 98
Entity #4 | Chains: D,H
MHC I-AK B CHAIN (BETA CHAIN) protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43665
95 % 2 7 8153 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 6 17 3103
70 % 44 152 161
50 % 45 161 183
40 % 45 161 194
30 % 90 334 98
Entity #5 | Chains: P,Q
CONALBUMIN PEPTIDE protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures