Sequence Similarity Clusters for the Entities in PDB 1D9F

Entity #1 | Chains: B
DNA/RNA (5'-D(*TP*TP)-R(*(U31)P)-D(*T)-3') hybrid, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA POLYMERASE I protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 5012
95 % 12 14 5334 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 12 14 5348
70 % 12 14 5214
50 % 12 14 4952
40 % 12 14 4665
30 % 12 14 4189

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KFS 2 A PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)) 562 2.7.7.7 | Details
2 2KFN 2 A KLENOW FRAGMENT OF DNA POLYMERASE I LARGE FRAGMENT, KLENOW FRAGMENT 562 2.7.7.7 | Details
3 2KFZ 2 A KLENOW FRAGMENT OF DNA POLYMERASE I LARGE FRAGMENT, KLENOW FRAGMENT 562 2.7.7.7 | Details
4 1KRP 2 A PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)) 562 2.7.7.7 | Details
5 1D8Y 2 A DNA POLYMERASE I KLENOW FRAGMENT 562 2.7.7.7 | Details
6 1D9D 2 A DNA POLYMERASE I KLENOW FRAGMENT 562 2.7.7.7 | Details
7 2KZZ 2 A PROTEIN (DNA POLYMERASE I) KLENOW FRAGMENT, LARGE FRAGMENT 562 2.7.7.7 | Details
8 1KSP 2 A PROTEIN (DNA POLYMERASE I-KLENOW FRAGMENT (E.C.2.7.7.7)) 562 2.7.7.7 | Details
9 1QSL 2 A DNA POLYMERASE I KLENOW FRAGMENT 562 2.7.7.7 | Details
10 2KZM 2 A PROTEIN (DNA POLYMERASE I) KLENOW FRAGMENT, LARGE FRAGMENT 562 2.7.7.7 | Details
11 1DPI 1 A DNA POLYMERASE I KLENOW FRAGMENT 562 2.7.7.7 | Details
12 1D9F 2 A DNA POLYMERASE I KLENOW FRAGMENT 562 2.7.7.7 | Details
13 1KLN 3 A PROTEIN (DNA POLYMERASE I KLENOW FRAGMENT (E.C.2.7.7.7)) 562 2.7.7.7 | Details
14 1KFD 1 A DNA POLYMERASE I KLENOW FRAGMENT 562 2.7.7.7 | Details