Sequence Similarity Clusters for the Entities in PDB 1D9F

Entity #1 | Chains: B
DNA/RNA (5'-D(*TP*TP)-R(*(U31)P)-D(*T)-3') hybrid, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA POLYMERASE I protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 4825
95 % 12 14 5138 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 12 14 5166
70 % 12 14 5034
50 % 12 14 4799
40 % 12 14 4524
30 % 12 14 4075

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures