Sequence Similarity Clusters for the Entities in PDB 1D9F

Entity #1 | Chains: B
DNA/RNA (5'-D(*TP*TP)-R(*(U31)P)-D(*T)-3') hybrid, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA POLYMERASE I protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 5133
95 % 12 14 5461 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 12 14 5469
70 % 12 14 5333
50 % 12 14 5041
40 % 12 14 4751
30 % 12 14 4264

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures