Sequence Similarity Clusters for the Entities in PDB 1D9F

Entity #1 | Chains: B
DNA/RNA (5'-D(*TP*TP)-R(*(U31)P)-D(*T)-3') hybrid, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA POLYMERASE I protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 5949
95 % 12 14 4569 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 12 14 4593
70 % 12 14 4499
50 % 12 14 4323
40 % 12 14 4123
30 % 12 14 3810

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.