Sequence Similarity Clusters for the Entities in PDB 1D8Y

Entity #1 | Chains: B
D(T)19 OLIGOMER dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA POLYMERASE I protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50283
95 % 5 14 4523 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.8
PDBFlex
90 % 5 14 4550
70 % 5 14 4464
50 % 5 14 4294
40 % 5 14 4096
30 % 5 14 3784

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.