Sequence Similarity Clusters for the Entities in PDB 1D8Y

Entity #1 | Chains: B
D(T)19 OLIGOMER dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA POLYMERASE I protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 14 4768
95 % 5 14 5085 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 5 14 5113
70 % 5 14 4966
50 % 5 14 4732
40 % 5 14 4458
30 % 5 14 4024

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures