Sequence Similarity Clusters for the Entities in PDB 1D8Y

Entity #1 | Chains: B
D(T)19 OLIGOMER dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA POLYMERASE I protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50922
95 % 5 14 4599 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 5 14 4629
70 % 5 14 4532
50 % 5 14 4356
40 % 5 14 4154
30 % 5 14 3832

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures