Sequence Similarity Clusters for the Entities in PDB 1D8U

Entity #1 | Chains: A,B
NON-SYMBIOTIC HEMOGLOBIN protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38188
95 % 3 3 14032 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 3 3 13780
70 % 8 8 2692
50 % 8 8 2666
40 % 15 27 1318
30 % 15 27 1311

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures