Sequence Similarity Clusters for the Entities in PDB 1D8E

Entity #1 | Chains: A
FARNESYLTRANSFERASE (ALPHA SUBUNIT) protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 34 352
95 % 41 42 415 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 54 56 369
70 % 54 56 404
50 % 54 56 481
40 % 54 56 516
30 % 54 56 515
Entity #2 | Chains: B
FARNESYLTRANSFERASE (BETA SUBUNIT) protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 41 917
95 % 49 56 878 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 49 56 912
70 % 49 56 944
50 % 49 56 993
40 % 49 56 1014
30 % 49 56 990
Entity #3 | Chains: P
K-RAS4B PEPTIDE SUBSTRATE protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.