Sequence Similarity Clusters for the Entities in PDB 1D8E

Entity #1 | Chains: A
FARNESYLTRANSFERASE (ALPHA SUBUNIT) protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 34 434
95 % 41 42 496 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 54 56 418
70 % 54 56 460
50 % 54 56 516
40 % 54 56 562
30 % 54 56 564
Entity #2 | Chains: B
FARNESYLTRANSFERASE (BETA SUBUNIT) protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 41 1145
95 % 49 56 963 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 49 56 990
70 % 49 56 1025
50 % 49 56 1072
40 % 49 56 1081
30 % 49 56 1080
Entity #3 | Chains: P
K-RAS4B PEPTIDE SUBSTRATE protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures