Sequence Similarity Clusters for the Entities in PDB 1D8E

Entity #1 | Chains: A
FARNESYLTRANSFERASE (ALPHA SUBUNIT) protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 34 390
95 % 41 42 470 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 54 56 395
70 % 54 56 434
50 % 54 56 508
40 % 54 56 549
30 % 54 56 543
Entity #2 | Chains: B
FARNESYLTRANSFERASE (BETA SUBUNIT) protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 41 966
95 % 49 56 924 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 49 56 956
70 % 49 56 986
50 % 49 56 1036
40 % 49 56 1051
30 % 49 56 1034
Entity #3 | Chains: P
K-RAS4B PEPTIDE SUBSTRATE protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures