Sequence Similarity Clusters for the Entities in PDB 1D6V

Entity #1 | Chains: L
CHIMERIC GERMLINE PRECURSOR OF OXY-COPE CATALYTIC ANTIBODY AZ-28 (LIGHT CHAIN) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41386
95 % 2 4 12525 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 2 4 12317
70 % 664 2362 1
50 % 1362 4781 1
40 % 1362 4781 1
30 % 1520 5635 1
Entity #2 | Chains: H
CHIMERIC GERMLINE PRECURSOR OF OXY-COPE CATALYTIC ANTIBODY AZ-28 (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40364
95 % 2 4 12440 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.9
PDBFlex
90 % 5 9 5819
70 % 656 2311 2
50 % 1363 4781 1
40 % 1363 4781 1
30 % 1521 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures