Sequence Similarity Clusters for the Entities in PDB 1D6V

Entity #1 | Chains: L
CHIMERIC GERMLINE PRECURSOR OF OXY-COPE CATALYTIC ANTIBODY AZ-28 (LIGHT CHAIN) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40282
95 % 2 4 12195 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 2 4 11997
70 % 637 2264 1
50 % 1307 4587 1
40 % 1307 4587 1
30 % 1455 5394 1
Entity #2 | Chains: H
CHIMERIC GERMLINE PRECURSOR OF OXY-COPE CATALYTIC ANTIBODY AZ-28 (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39288
95 % 2 4 12111 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.9
PDBFlex
90 % 4 8 6229
70 % 630 2222 2
50 % 1308 4587 1
40 % 1308 4587 1
30 % 1456 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.