Sequence Similarity Clusters for the Entities in PDB 1D6K

Entity #1 | Chains: B
5S RRNA E-LOOP (5SE) rna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 148 115
95 % 147 148 157
90 % 147 148 167
70 % 147 148 188
50 % 148 149 225
40 % 148 149 244
30 % 148 149 252

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DFU 3 P RIBOSOMAL PROTEIN L25 PROTEIN FROM THE LARGE RIBOSOMAL SUBUNIT 562
2 4YBB 43 CW, DW 50S ribosomal protein L25 562
3 5IZN 1 A, B, C, D, E, F, G, H 50S ribosomal protein L25 672
4 5J7L 49 CW, DW 50S ribosomal protein L25 562
5 4WOI 46 BV, CV 50S ribosomal protein L25 562
6 5JC9 50 CW, DW 50S ribosomal protein L25 562
7 5J8A 50 CW, DW 50S ribosomal protein L25 562
8 5J5B 49 CW, DW 50S ribosomal protein L25 562
9 4U27 43 BV, DV 50S ribosomal protein L25 562
10 4U26 43 BV, DV 50S ribosomal protein L25 562
11 5IT8 51 CW, DW 50S ribosomal protein L25 562
12 4V9D 46 CV, DV 50S ribosomal protein L25 562
13 4V9P 22 AV, CV, EV, GV 50S ribosomal protein L25 562
14 5J91 50 CW, DW 50S ribosomal protein L25 562
15 5J88 50 CW, DW 50S ribosomal protein L25 562
16 4U24 43 BV, DV 50S ribosomal protein L25 562
17 4V9O 22 AV, CV, EV, GV 50S ribosomal protein L25 562
18 4WF1 43 BV, DV 50S ribosomal protein L25 562
19 4U25 43 BV, DV 50S ribosomal protein L25 562
20 4WWW 22 RV, YV 50S ribosomal protein L25 562
21 4V7T 43 BV, DV 50S ribosomal protein L25 562
22 4V7U 43 BV, DV 50S ribosomal protein L25 562
23 4V6C 43 BV, DV 50S ribosomal protein L25 562
24 4V7V 43 BV, DV 50S ribosomal protein L25 562
25 4V7S 43 BV, DV 50S ribosomal protein L25 562
26 4U20 43 BV, DV 50S ribosomal protein L25 562
27 4U1V 43 BV, DV 50S ribosomal protein L25 562
28 4V9C 45 BV, DV 50S ribosomal protein L25 562
29 4V85 56 BZ 50S ribosomal protein L25 1 562
30 4U1U 43 BV, DV 50S ribosomal protein L25 562
31 4V6D 45 BV, DV 50S ribosomal protein L25 562
32 4V6E 45 BV, DV 50S ribosomal protein L25 562
33 4V52 35 BV, DV 50S ribosomal protein L25 562
34 4V89 55 BZ 50S ribosomal protein L25 562
35 4V54 35 BV, DV 50S ribosomal protein L25 562
36 4V50 45 BV, DV 50S ribosomal protein L25 562
37 4V57 35 BV, DV 50S ribosomal protein L25 562
38 4V64 24 BV, DV 50S ribosomal protein L25 562
39 4V4H 24 BV, DV 50S RIBOSOMAL PROTEIN L25 562
40 4V4Q 24 BV, DV 50S ribosomal protein L25 562
41 4V5B 28 AV, CV 50S RIBOSOMAL PROTEIN L25 562
42 4V53 35 BV, DV 50S ribosomal protein L25 562
43 4V56 35 BV, DV 50S ribosomal protein L25 562
44 4V55 35 BV, DV 50S ribosomal protein L25 562
45 4V5Y 35 BV, DV 50S ribosomal protein L25 562
46 6ENU 43 V 50S ribosomal protein L25 562
47 6ENJ 20 V 50S ribosomal protein L25 562
48 6ENF 42 V 50S ribosomal protein L25 562
49 5O2R 22 V 50S ribosomal protein L25 562
50 5NWY 23 i 50S ribosomal protein L25 562
51 5NP6 46 t 50S ribosomal protein L25 562
52 5NCO 25 W 50S ribosomal protein L25 562
53 5UYK 21 24 50S ribosomal protein L25 562
54 5UYL 21 24 50S ribosomal protein L25 562
55 5UYM 21 24 50S ribosomal protein L25 562
56 5UYN 21 24 50S ribosomal protein L25 562
57 5UYP 21 24 50S ribosomal protein L25 562
58 5UYQ 21 24 50S ribosomal protein L25 562
59 5U9F 27 24 50S ribosomal protein L25 562
60 5U9G 27 24 50S ribosomal protein L25 562
61 5U4I 22 W 50S ribosomal protein L25 Gene Name(s): rplY b2185 JW2173 562
62 5MGP 21 V 50S ribosomal protein L25 562
63 5MDV 28 V 50S ribosomal protein L25 562
64 5MDW 28 V 50S ribosomal protein L25 562
65 5MDY 28 V 50S ribosomal protein L25 562
66 5MDZ 26 V 50S ribosomal protein L25 562
67 5H5U 29 W 50S ribosomal protein L25 562
68 5LZA 45 V 50S ribosomal protein L25 562
69 5LZB 47 V 50S ribosomal protein L25 562
70 5LZC 47 V 50S ribosomal protein L25 562
71 5LZD 47 V 50S ribosomal protein L25 562
72 5LZE 46 V 50S ribosomal protein L25 562
73 5LZF 46 V 50S ribosomal protein L25 562
74 5KPS 22 V 50S ribosomal protein L25 562
75 5KPV 21 U 50S ribosomal protein L25 562
76 5KPW 21 U 50S ribosomal protein L25 562
77 5KPX 21 U 50S ribosomal protein L25 562
78 5KCR 23 1Z 50S ribosomal protein L25 562
79 5KCS 24 1Z 50S ribosomal protein L25 562
80 5L3P 21 Z 50S ribosomal protein L25 562
81 5JU8 46 BV 50S ribosomal protein L25 562
82 5JTE 47 BV 50S ribosomal protein L25 562
83 5IQR 21 V 50S ribosomal protein L25 562
84 3JCN 27 V 50S ribosomal protein L25 562
85 3JCJ 26 U 50S ribosomal protein L25 562
86 3JCD 46 V 50S ribosomal protein L25 562
87 3JCE 49 V 50S ribosomal protein L25 562
88 5GAG 25 W 50S ribosomal protein L25 562
89 5GAH 25 W 50S ribosomal protein L25 562
90 5GAE 23 W 50S ribosomal protein L25 562
91 5GAF 25 W 50S ribosomal protein L25 562
92 5GAD 25 W 50S ribosomal protein L25 562
93 3JBU 47 w 50S ribosomal protein L25 8333
94 3JBV 54 w 50S ribosomal protein L25 8333
95 5ADY 30 V 50S RIBOSOMAL PROTEIN L25 562
96 3JA1 31 LX 50S ribosomal protein L25 562
97 3J9Z 35 LT 50S ribosomal protein L25 562
98 3J9Y 46 V 50S ribosomal protein L25 562
99 5AKA 30 V 50S RIBOSOMAL PROTEIN L25 562
100 5AFI 47 V 50S ribosomal protein L25 562
101 3J8G 18 W 50S ribosomal protein L25 562
102 4UY8 9 8 50S RIBOSOMAL PROTEIN L25 562
103 3J7Z 30 V 50S ribosomal protein L25 562
104 4CSU 32 W 50S RIBOSOMAL PROTEIN L25 562
105 4V7D 25 AY 50S ribosomal protein L25 562
106 4V7C 48 BX 50S ribosomal protein L25 562
107 4V7B 47 BV 50S ribosomal protein L25 562
108 3J5L 30 V 50S ribosomal protein L25 562
109 4V6Y 44 BV 50S ribosomal protein L23 562
110 4V6Z 44 BV 50S ribosomal protein L25 562
111 4V70 44 BV 50S ribosomal protein L25 562
112 4V71 44 BV 50S ribosomal protein L25 562
113 4V72 44 BV 50S ribosomal protein L25 562
114 4V73 44 BV 50S ribosomal protein L25 562
115 4V74 44 BV 50S ribosomal protein L25 562
116 4V75 44 BV 50S ribosomal protein L25 562
117 4V76 44 BV 50S ribosomal protein L25 562
118 4V77 44 BV 50S ribosomal protein L25 562
119 4V78 44 BV 50S ribosomal protein L25 562
120 4V79 44 BV 50S ribosomal protein L25 562
121 4V7A 43 BV 50S ribosomal protein L25 562
122 4V6V 41 BZ 50S ribosomal protein L25 562
123 4V6T 46 BV 50S ribosomal protein L25 562
124 4V6S 24 AX 50S ribosomal protein L25 562
125 4V6P 48 BX 50S ribosomal protein L25 562
126 4V6Q 48 BX 50S ribosomal protein L25 562
127 4V6R 48 BX 50S ribosomal protein L25 562
128 4V6N 24 AX 50S ribosomal protein L25 562
129 4V6O 48 BX 50S ribosomal protein L25 562
130 4V6M 50 BV 50S ribosomal protein L25 562
131 4V6K 23 AW 50S ribosomal protein L25 562
132 4V6L 47 BW 50S ribosomal protein L25 562
133 4V5H 55 BW 50S RIBOSOMAL PROTEIN L25 562
134 4V7I 26 AV 50S ribosomal protein L25 562
135 4V69 41 BV 50S ribosomal protein L25 562
136 4V65 26 BC 50S ribosomal protein L25 562
137 4V66 26 BC 50S ribosomal protein L25 562
138 3BBX 3 V 50S ribosomal protein L25 562
139 2RDO 3 V 50S ribosomal protein L25 562
140 2J28 30 V 50S RIBOSOMAL PROTEIN L25 562
141 4V4V 44 BT 50S ribosomal protein L25 562
142 4V4W 44 BT 50S ribosomal protein L25 562
143 4V47 21 AT 50S ribosomal protein L25 562
144 4V48 22 AT 50S ribosomal protein L25 562
145 1ML5 43 v 50S RIBOSOMAL PROTEIN L25 562
146 4V42 45 BV 50S RIBOSOMAL PROTEIN L25 274
147 487D 7 N PROTEIN (50S L25 RIBOSOMAL PROTEIN) 562
148 1D6K 2 A RIBOSOMAL PROTEIN L25 562
149 1B75 1 A PROTEIN (50S RIBOSOMAL PROTEIN L25) 562