Sequence Similarity Clusters for the Entities in PDB 1D5Z

Entity #1 | Chains: A
PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 91 217
95 % 24 98 258 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 26 114 222
70 % 26 114 242
50 % 35 170 175
40 % 35 170 188
30 % 69 353 79
Entity #2 | Chains: B
PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 22 2474
95 % 13 28 2069 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 24 94 286
70 % 35 169 151
50 % 35 171 174
40 % 35 171 187
30 % 70 353 79
Entity #3 | Chains: C
PROTEIN (ENTEROTOXIN TYPE B) protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 17 1706
95 % 6 19 1717 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 6 19 1753
70 % 6 19 1762
50 % 18 57 513
40 % 19 60 508
30 % 34 90 364
Entity #4 | Chains: D
PROTEIN (PEPTIDOMIMETIC INHIBITOR) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures