Sequence Similarity Clusters for the Entities in PDB 1D5Z

Entity #1 | Chains: A
PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 74 231
95 % 17 81 295 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 19 97 236
70 % 19 97 269
50 % 25 149 179
40 % 25 149 196
30 % 49 310 99
Entity #2 | Chains: B
PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 5751
95 % 7 18 3150 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 17 76 339
70 % 24 140 163
50 % 25 149 178
40 % 25 149 195
30 % 50 310 99
Entity #3 | Chains: C
PROTEIN (ENTEROTOXIN TYPE B) protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 16 1559
95 % 6 19 1611 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 6 19 1640
70 % 6 19 1657
50 % 18 57 492
40 % 19 60 478
30 % 33 89 323
Entity #4 | Chains: D
PROTEIN (PEPTIDOMIMETIC INHIBITOR) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.