Sequence Similarity Clusters for the Entities in PDB 1D5Z

Entity #1 | Chains: A
PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 82 220
95 % 21 89 277 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 23 105 231
70 % 23 105 263
50 % 32 161 179
40 % 32 161 194
30 % 63 334 83
Entity #2 | Chains: B
PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 17 2741
95 % 11 26 2148 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 21 84 318
70 % 31 152 159
50 % 32 161 178
40 % 32 161 193
30 % 64 334 83
Entity #3 | Chains: C
PROTEIN (ENTEROTOXIN TYPE B) protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 16 1601
95 % 6 19 1650 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 6 19 1683
70 % 6 19 1700
50 % 18 57 503
40 % 19 60 490
30 % 33 89 336
Entity #4 | Chains: D
PROTEIN (PEPTIDOMIMETIC INHIBITOR) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures