Sequence Similarity Clusters for the Entities in PDB 1D5X

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 91 217
95 % 65 98 258 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 72 114 222
70 % 72 114 242
50 % 101 170 175
40 % 101 170 188
30 % 208 353 85
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 22 2474
95 % 24 28 2069 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 64 94 287
70 % 102 169 151
50 % 102 171 174
40 % 102 171 187
30 % 209 353 85
Entity #3 | Chains: C
ENTEROTOXIN TYPE B protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 1703
95 % 11 19 1719 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 11 19 1754
70 % 11 19 1763
50 % 43 57 513
40 % 46 60 509
30 % 69 90 364
Entity #4 | Chains: D
DIPEPTIDE MIMETIC INHIBITOR protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures