Sequence Similarity Clusters for the Entities in PDB 1D5X

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 71 231
95 % 50 78 292 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 57 94 231
70 % 57 94 266
50 % 82 146 173
40 % 82 146 188
30 % 169 304 93
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 5491
95 % 15 18 3030 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 48 73 341
70 % 79 137 163
50 % 82 146 172
40 % 82 146 187
30 % 170 304 93
Entity #3 | Chains: C
ENTEROTOXIN TYPE B protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 16 1479
95 % 11 18 1645 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 11 18 1679
70 % 11 18 1714
50 % 43 56 479
40 % 46 59 471
30 % 68 88 312
Entity #4 | Chains: D
DIPEPTIDE MIMETIC INHIBITOR protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.