Sequence Similarity Clusters for the Entities in PDB 1D5W

Entity #1 | Chains: A,B,C
TRANSCRIPTIONAL REGULATORY PROTEIN FIXJ protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8405
95 % 3 4 8455 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 3 4 8386
70 % 3 4 8077
50 % 3 4 7418
40 % 3 4 6823
30 % 182 262 123

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures