Sequence Similarity Clusters for the Entities in PDB 1D5S

Entity #1 | Chains: A
P1-ARG ANTITRYPSIN protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15131
95 % 19 26 2016 Flexibility: Medium
Max RMSD: 17.3, Avg RMSD: 4.9
PDBFlex
90 % 19 26 2065
70 % 19 26 2072
50 % 41 48 906
40 % 84 97 407
30 % 151 178 189
Entity #2 | Chains: B
P1-ARG ANTITRYPSIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 75169
95 % 2 2 37407 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 35700
70 % 2 2 31721
50 % 2 2 27110
40 % 2 2 23949
30 % 2 2 20346

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures