Sequence Similarity Clusters for the Entities in PDB 1D5S

Entity #1 | Chains: A
P1-ARG ANTITRYPSIN protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 14450
95 % 19 26 1908 Flexibility: Medium
Max RMSD: 17.3, Avg RMSD: 4.7
PDBFlex
90 % 19 26 1954
70 % 19 26 1971
50 % 41 48 874
40 % 84 97 366
30 % 151 178 181
Entity #2 | Chains: B
P1-ARG ANTITRYPSIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72160
95 % 2 2 35976 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 34388
70 % 2 2 30671
50 % 2 2 26273
40 % 2 2 23219
30 % 2 2 19730

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.