Sequence Similarity Clusters for the Entities in PDB 1D5S

Entity #1 | Chains: A
P1-ARG ANTITRYPSIN protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15392
95 % 21 28 1873 Flexibility: Medium
Max RMSD: 17.3, Avg RMSD: 4.9
PDBFlex
90 % 21 28 1914
70 % 21 28 1931
50 % 43 50 882
40 % 86 99 412
30 % 153 180 188
Entity #2 | Chains: B
P1-ARG ANTITRYPSIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 76106
95 % 2 2 37874 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 36135
70 % 2 2 32098
50 % 2 2 27417
40 % 2 2 24226
30 % 2 2 20579

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures