Sequence Similarity Clusters for the Entities in PDB 1D5S

Entity #1 | Chains: A
P1-ARG ANTITRYPSIN protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 16454
95 % 21 28 1935 Flexibility: Medium
Max RMSD: 17.3, Avg RMSD: 4.7
PDBFlex
90 % 21 28 1976
70 % 21 28 1993
50 % 50 57 794
40 % 115 132 262
30 % 166 193 182
Entity #2 | Chains: B
P1-ARG ANTITRYPSIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58859
95 % 2 2 33637 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 31907
70 % 2 2 28501
50 % 2 2 24365
40 % 2 2 21434
30 % 2 2 17884

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures