Sequence Similarity Clusters for the Entities in PDB 1D5S

Entity #1 | Chains: A
P1-ARG ANTITRYPSIN protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 14205
95 % 19 26 1863 Flexibility: Medium
Max RMSD: 17.3, Avg RMSD: 4.8
PDBFlex
90 % 19 26 1911
70 % 19 26 1933
50 % 41 48 860
40 % 84 97 347
30 % 151 178 179
Entity #2 | Chains: B
P1-ARG ANTITRYPSIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71221
95 % 2 2 35432 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 2 33883
70 % 2 2 30218
50 % 2 2 25900
40 % 2 2 22895
30 % 2 2 19448

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.