Sequence Similarity Clusters for the Entities in PDB 1D5N

Entity #1 | Chains: A,B,C,D
PROTEIN (MANGANESE SUPEROXIDE DISMUTASE) protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 1597
95 % 5 13 1275 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 5 13 1300
70 % 5 13 1338
50 % 18 119 137
40 % 19 132 130
30 % 19 134 137

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures