Sequence Similarity Clusters for the Entities in PDB 1D5M

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 69 236
95 % 18 76 310
90 % 20 92 238
70 % 20 92 273
50 % 26 144 180
40 % 26 144 195
30 % 51 300 91
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39912
95 % 8 18 2985
90 % 18 73 337
70 % 25 135 166
50 % 26 144 179
40 % 26 144 194
30 % 52 300 91
Entity #3 | Chains: C
ENTEROTOXIN TYPE B protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 16 1451
95 % 7 18 1630
90 % 7 18 1658
70 % 7 18 1697
50 % 20 56 471
40 % 21 59 465
30 % 35 88 307
Entity #4 | Chains: D
INHIBITOR protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.