Sequence Similarity Clusters for the Entities in PDB 1D5M

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 74 227
95 % 20 81 288
90 % 22 97 232
70 % 22 97 264
50 % 28 149 176
40 % 28 149 189
30 % 55 310 94
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41449
95 % 8 18 3096
90 % 20 76 331
70 % 27 140 161
50 % 28 149 175
40 % 28 149 188
30 % 56 310 94
Entity #3 | Chains: C
ENTEROTOXIN TYPE B protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 16 1530
95 % 7 18 1707
90 % 7 18 1743
70 % 7 18 1766
50 % 20 56 492
40 % 21 59 478
30 % 35 88 321
Entity #4 | Chains: D
INHIBITOR protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.