Sequence Similarity Clusters for the Entities in PDB 1D5M

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 69 223
95 % 18 76 297
90 % 20 92 228
70 % 20 92 262
50 % 25 142 175
40 % 25 142 189
30 % 49 296 95
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 38962
95 % 8 18 2920
90 % 18 73 324
70 % 24 133 163
50 % 25 142 174
40 % 25 142 188
30 % 50 296 95
Entity #3 | Chains: C
ENTEROTOXIN TYPE B protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 16 1391
95 % 7 18 1582
90 % 7 18 1617
70 % 7 18 1650
50 % 20 56 456
40 % 21 59 441
30 % 35 88 295
Entity #4 | Chains: D
INHIBITOR protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.