Sequence Similarity Clusters for the Entities in PDB 1D5F

Entity #1 | Chains: A,B,C
E6AP HECT CATALYTIC DOMAIN, E3 LIGASE protein, length: 358 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12719
95 % 2 2 12149 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 2 2 11973
70 % 2 2 11308
50 % 2 2 10124
40 % 2 2 9159
30 % 18 23 1639

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures